Polycomb response elements (PREs) are cis-regulatory sequences required for Polycomb repression of Hox genes in Drosophila. PREs function as potent silencers in the context of Hox reporter genes and they have been shown to partially repress a linked miniwhite reporter gene. The silencing capacity of PREs has not been systematically tested and, therefore, it has remained unclear whether only specific enhancers and promoters can respond to Polycomb silencing. Here, using a reporter gene assay in imaginal discs, we show that a PRE from the Drosophila Hox gene Ultrabithorax potently silences different heterologous enhancers and promoters that are normally not subject to Polycomb repression. Silencing of these reporter genes is abolished in PcG mutants and excision of the PRE from the reporter gene during development results in loss of silencing within one cell generation. Together, these results suggest that PREs function as general silencer elements through which PcG proteins mediate transcriptional repression.
Research article 1960Hox genes through which PcG proteins mediate long-term repression by modifying chromatin structure.Although PREs function as very potent silencers within Hox reporter genes, their ability to silence transcription in the context of other enhancers and promoters has not been systematically tested. Several PREs have been reported to partially repress transcription of a linked miniwhite reporter gene (Chan et al., 1994;Zink and Paro, 1995; Hagstrom et al., 1997) (reviewed by Kassis, 2002). In those studies, the effect of a PRE on miniwhite expression was analyzed by monitoring eye pigmentation in adult flies, and repression of miniwhite by the linked PRE was revealed by an increase in eye pigmentation in animals that are heterozygous for PcG mutations. It is important to note that the miniwhite reporter gene was never completely repressed in those studies, even though this process is often referred to as 'miniwhite silencing'. A major limitation in the interpretation of this incomplete silencing of miniwhite is the fact that the miniwhite gene in the reporter construct also served as transformation marker to isolate transgenic lines harboring the reporter gene and, hence, only lines showing incomplete silencing of miniwhite were isolated and analyzed. Thus, it has remained unclear whether PREs function as general transcriptional silencers, or whether they only function effectively in the context of Hox genes and require specific target sequences in enhancers and/or promoters.Here, using a reporter gene assay in imaginal discs, we test a PRE from the Hox gene Ultrabithorax (Ubx) for its capacity to silence reporter genes that contain enhancer and promoter sequences from genes that are normally not under PcG control. We find that the Ubx PRE very potently prevents transcription of each of the tested reporter genes, and we show that this silencing depends on PcG gene function. Excision of the PRE from the reporter gene by flp-mediated recombination results in the complete loss of repression ...