Knowing the timing, level, cellular localization, and cell type that a gene is expressed in contributes to our understanding of the function of the gene. Each of these features can be accomplished with in situ hybridization to mRNAs within cells. Here we present a radioactive in situ hybridization method modified from Clayton et al. (1988) 1 that has been working successfully in our lab for many years, especially for adult vertebrate brains [2][3][4][5] . The long complementary RNA (cRNA) probes to the target sequence allows for detection of low abundance transcripts 6,7 . Incorporation of radioactive nucleotides into the cRNA probes allows for further detection sensitivity of low abundance transcripts and quantitative analyses, either by light sensitive x-ray film or emulsion coated over the tissue. These detection methods provide a long-term record of target gene expression. Compared with non-radioactive probe methods, such as DIG-labeling, the radioactive probe hybridization method does not require multiple amplification steps using HRP-antibodies and/or TSA kit to detect low abundance transcripts. Therefore, this method provides a linear relation between signal intensity and targeted mRNA amounts for quantitative analysis. It allows processing 100-200 slides simultaneously. It works well for different developmental stages of embryos. Most developmental studies of gene expression use whole embryos and non-radioactive approaches 8,9 , in part because embryonic tissue is more fragile than adult tissue, with less cohesion between cells, making it difficult to see boundaries between cell populations with tissue sections. In contrast, our radioactive approach, due to the larger range of sensitivity, is able to obtain higher contrast in resolution of gene expression between tissue regions, making it easier to see boundaries between populations. Using this method, researchers could reveal the possible significance of a newly identified gene, and further predict the function of the gene of interest.
Video LinkThe video component of this article can be found at https://www.jove.com/video/3764/ Protocol 1. Tissue Preparation 1. Harvest fresh tissues. For avian embryos, carefully open eggs and clean the embryo in a dish with 1xPBS, two times. For adult brains, quickly remove the brain and gently wash with 1 x PBS. 2. Embed embryos or adult brain into an embedded mold full of OCT tissue tek, orientating the tissue as needed for sectioning, and quickly freeze the block by placing it into a ethanol and dry ice mixture, being careful not to get the mixture inside of the block. 3. Slice the frozen sample in a cryostat into 10-12 μm thick sections. For brain and embryonic tissue, the best cutting temperate is within the range of -18 °C to -20 °C. 4. Mount frozen sections on super plus glass slides. 5. Store the sections in a slide box at -80 °C.
Generation of Radioactive Riboprobes (Use radiation safety procedures of your institution)1. Generate a purified linear DNA template of your cDNA of interest either by enzyme ...