Plant production today depends on the ability of agriculturists to transport and recycle minerals, particularly those minerals which are nutritionally important to animals and human beings, through various agriculture products. It is important to note that the attenuation of these mineral deposits by green plants, as well as their subsequent role in the production of organic compounds, is fundamental to almost all known forms of life. Selenium (Se) is among those trace mineral which are crucial for the maintenance of plant physiology. The significance, production, and biological effects of this element, as well as its application in sustainable development, are remaining an interesting topic of discussion. Moreover, there has been a huge rise in the potential applications of nanotechnology in the food and agriculture industries. Several studies have been conducted on the various biological activities of selenium nanoparticles (SeNPs) and their biosynthesis. There is plenty of research performed on the effects of Se in plant nutrition and physiology, but there is a lack of information about the effects of SeNPs in SeNPs toxicity, and other aspects of using SeNPs in agriculture. The current review is focused on recent information related to the effects and fate of SeNPs in agronomy. We also aimed attention at the primary sources and behavior of Se in different environments, such as soil, water, air, and plants. All the data provides an extremely fertile domain for future investigation and research.