The biomolecule-assisted self-assembly of semiconductive molecules has been developed recently for the formation of potential bio-based functional materials. Oligopeptide-assisted self-assembly of oligothiophene through weak intermolecular interactions was investigated; specifically the self-assembly and chirality-transfer behavior of achiral oligothiophenes in the presence of an oligopeptide with a strong tendency to form β-sheets. Two kinds of oligothiophenes without (QT) or with (QTDA) carboxylic groups were selected to explore the effect of the end functional group on self-assembly and chirality transfer. In both cases, organogels were formed. However, the assembly behavior of QT was quite different from that of QTDA. It was found that QT formed an organogel with the oligopeptide and co-assembled into chiral nanostructures. Conversely, although QTDA also formed a gel with the oligopeptide, it has a strong tendency to self-assemble independently. However, during the formation of the xerogel, the chirality of the oligopeptide can also be transferred to the QTDA assemblies. Different assembly models were proposed to explain the assembly behavior.