Application of four nano-contact mechanics models, JKR, DMT, Hertz and PT in manipulation of biological cells in biological environment based on atomic force microscope has been analyzed, and the sensitive and non-sensitive parameters and their sensitive ranges have been identified. To analyze sensitivity of contact theories to basic parameters of biological cell, the Sobol method was used. All the used models are small deformation contact mechanics models, but they are different in considerations and limitations. This selection was on purpose to analyze and compare theoretical and empirical models sensitivities. The results indicate that the deformation of biological nano-particle is very sensitive to the elasticity modulus in all models. Adhesion energy, Poisson ratio and particle radius have, respectively, the next ranks which the results of graphic SA confirm, but their effects are not the same in different models. Moreover, the results of the graphic sensitivity analysis SA show that the degree of sensitivity depends on the apparent values of input parameters, such that by changing the magnitude of a specific parameter, it could be possible to increase or decrease the sensitivity.