We have examined the role of 4-thiouridine in the responses of Salmonella typhimurium to near-UV irradiation. Mutants lacking 4-thiouridine (nuv) and mutants defective in the synthesis of ppGpp (guanosine 5'-diphosphate-3'-diphosphate) (relA) were found to be sensitive to killing by near-UV. Near-UV induced the synthesis of a set of proteins that were not induced in the nuv mutant. Some of these proteins were identified as oxidative defense proteins, and others were identified as ppGpp-inducible proteins. Over 100-fold increases in ApppGpp (adenosine 5', 5"'-triphosphoguanosine-3"'-diphosphate, the adenylylated form of ppGpp) were observed in wild-type cells after near-UV irradiation but not in the 4-thiouridine-deficient mutant. These data support a model in which ppGpp and ApppGpp, a dinucleotide proposed to be synthesized by tRNA-aminoacyl synthetases as a response to the cross-linking of 4-thiouridine in tRNA by near-UV, induce the synthesis of proteins necessary for resistance to near-UV irradiation.One of the most common stresses confronted by organisms is solar radiation. The most energetic part of the solar spectrum which penetrates the atmosphere is the near-UV region (300 to 400 nm) (22). Studies on the environment mortality of bacteria have found that die-off is dependent on light exposure, especially the near-UV portion of the solar spectrum (10,16,17). Since enteric bacteria such as Escherichia coli must adapt to exposures of near-UV during transmission between hosts (8), they are an ideal system for characterizing mechanisms involved in protection from the toxic effects of near-UV.The irradiation of growing E. coli cells with near-UV results in the cessation of growth long before lethal effects are observed (21,22). This growth lag is dependent on the tRNA-modified base 4-thiouridine (s4U), which is found in 65% of tRNA species (22,40,45). This base is unusual in that it has an absorption maximum in the near-UV region (334 nm). After exposure to near-UV, S4U participates in a photochemical reaction which generates intramolecular cross-linking between S4U and a specific cytosine (13,14,29). These cross-linked tRNAs have been shown to be poor substrates for aminoacylation (51). The accumulation of nonaminoacylated tRNA serves to trigger the stringent response via the relA gene product, which is involved in the synthesis of ppGpp (guanosine 5'-diphosphate-3'-diphosphate) (9, 15), which then acts to inhibit stable RNA synthesis while inducing amino acid biosynthesis (15, 43). Inhibition of protein synthesis after near-UV exposure in E. coli is a result of both the stringent response and decreased aminoacylation of tRNA (44).Near-UV exerts toxic effects on E. coli and Salmonella typhimurium at higher fluences, primarily through oxidative mechanisms (22, 23). Macromolecules which absorb in the near-UV region (i.e., heme and flavins) may act as endogenous photosensitizers, transferring the absorbed energy to 02 and forming toxic oxygen species (10,22,23,48). The response of bacteria to oxidative stress (s...