Lucerne (Medicago sativa L.) has a large taproot to store and release starch, carbohydrates and nutrients during the plant's growth. Recommended management of the lucerne crop aims to keep the taproot stable subject to the demands for feed provision and stand longevity. Field experiments were conducted in Victoria, Australia, to examine the effects of recovery period on taproot mass and nutritive status. Both experiments used established SARDI Seven lucerne crops and were either cut every 21 days (short recovery SR) or every 42 days (long recovery LR). At each defoliation, taproots were extracted for determination of DM yield and starch, water‐soluble carbohydrate (WSC) and nitrogen (N) concentration and DM yield. At both sites, WSC and N DM yields along with total taproot DM yield did not change greatly as the experiment progressed. Starch was responsive to herbage accumulation with both concentration and DM yield, increasing when herbage accumulation rates were high and decreasing when herbage accumulation rates were low. At both sites, LR taproots had starch levels equal to or higher than those of SR taproots. We conclude that short intervals between defoliations disrupt the energy cycling between shoots and roots. This is likely to reduce lucerne productivity, particularly during periods of rapid growth.