SummaryThis paper investigates an improved space vector pulse width modulation (SVPWM) and channel‐decoupled method for dual‐channel permanent magnet synchronous machine (PMSM) powered by unbalanced battery packs. Recently, individual power supplied voltage source inverter (VSI) is introduced considering insufficient power rating and unsafe driving in electrical vehicles (EVs). However, the issues of strong coupling and unbalanced power supplies exist between channels. Firstly, a modular topology is constructed to improve the reliability and security of the system. Secondly, the channel‐decoupled method is introduced based on multi‐dq rather than the conventional vector space decomposition (VSD) to eliminate coupling among multi‐channel. Thereafter, the variable distribution of voltage vectors (VVs) is corrected by the proposed SVPWM, where the switch can be operated appropriately. Finally, the comparative experiments are carried out focusing on decoupling and unbalanced power supplies, and the results present superior performance in terms of low torque fluctuation and balanced channel currents.