This communication describes ultrastructural variations among synaptosomal fractions isolated from the corpus striatum of the rat by incomplete equilibrium sedimentation in sucrose density gradients, and attempts to relate the variations to neurotransmitterspecific synaptosomes. The concentration of synaptosomes in each fraction of the density gradient was found to be correlated with the concentration of potassium, a marker for cytoplasm occluded within synaptosomes. Monoamine oxidase activity was found to be correlated with the incidence of free mitochondria in the gradients.Synaptosomes from denser gradient fractions showed a markedly increased frequency of adherent postsynaptic elements and intraterminal mitochondria. These denser gradient fractions were rich in synaptosomes containing norepinephrine, dopamine, serotonin, and acetylcholine, while synaptosomes in lighter portions of the gradients were rich in -y-aminobutyric acid and other amino acids. These data suggest that significant morphological variations may exist among different neurotransmitterspecific nerve terminals in the brain. mossy fiber endings have been separated from smaller synap tosomes in the cerebellum; however, both populations are rich in acetylcholine (7). Cotman et al. (8) also reported morphological differences in synaptosomal populations separated by differential centrifugation. Recently (9), various neurotransmitters in brain tissue were labeled with different radioactive isotopes, and subtle variations in the sedimentation properties of synaptosomes that store different neurotransmitters were thereby discriminated. Using this approach and centrifuging sucrose density gradients for brief intervals (a procedure designated "incomplete equilibrium sedimentation"), we have been able to enhance the resolution of these synaptosomes (10, 11).We describe here the ultrastructural variations among subcellular fractions isolated from the corpus striatum of the rat by incomplete equilibrium sedimentation, and attempt to correlate them with the neurotransmitter-specific synaptosomes contained in different subcellular fractions. Ascertaining the function of morphologically identifiable synapses in the brain is a fundamental problem of neurobiology. A knowledge of which synapses utilize which neurotransmitters would constitute a great advance toward an understanding of synaptic organization in the brain. Subcellular fractionation of brain has been a useful approach to elucidating chemical features of ultrastructural elements. When brain tissue is homogenized in isotonic sucrose, large numbers of nerve terminals "pinch off" to form intact, membrane-bound particles called "synaptosomes," which can be isolated by differential and density gradient centrifugation (1, 2). Such particles contain various putative transmitter substances, such as acetylcholine, norepinephrine, dopamine, serotonin, and 'y-aminobutyric acid (GABA) (1-3). Isolation of the "synaptosomal" fraction of brain tissue, however, does not provide information about the morphol...