2023
DOI: 10.1186/s12859-023-05530-7
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SeQual-Stream: approaching stream processing to quality control of NGS datasets

Óscar Castellanos-Rodríguez,
Roberto R. Expósito,
Juan Touriño

Abstract: Background Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, needing to have the complete genetic dataset before processing can even begin. This limitation clearly hinders quality control performance in those scenarios where the dataset must be downloaded from a remote repository and/or copied to a distributed file system for its parallel processing. … Show more

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