When starved for a single amino acid, the budding yeast Saccharomyces cerevisiae activates the eukaryotic initiation factor 2␣ (eIF2␣) kinase GCN2 in a GCN1-dependent manner. Phosphorylated eIF2␣ inhibits general translation but selectively derepresses the synthesis of the transcription factor GCN4, which leads to coordinated induction of genes involved in biosynthesis of various amino acids, a phenomenon called general control response. We recently demonstrated that this response requires binding of GCN1 to the GI domain occurring at the N terminus of GCN2 (Kubota, H., Sakaki, Y., and Ito, T. (2000) J. Biol. Chem. 275, 20243-20246). Here we provide the first evidence for the involvement of GCN1-GCN2 interaction in activation of GCN2 per se. We identified a C-terminal segment of GCN1 sufficient to bind the GI domain and used a novel dual bait two-hybrid method to identify mutations rendering GCN1 incapable of interacting with GCN2. The yeast bearing such an allele, gcn1-F2291L, fails to display derepression of GCN4 translation and hence general control response, as does a GI domain mutant, gcn2-Y74A, defective in association with GCN1. Furthermore, we demonstrated that phosphorylation of eIF2␣ is impaired in both mutants. Since GCN2 is the sole eIF2␣ kinase in yeast, these findings indicate a critical role of GCN1-GCN2 interaction in activation of the kinase in vivo.Protein synthesis in eukaryotic cells is suppressed by stressinduced phosphorylation of eukaryotic initiation factor 2␣ (eIF2␣) 1 on a serine residue at position 51 (1). The phosphorylation converts eIF2␣ from the substrate to an inhibitor of eIF2B, the guanine nucleotide exchange factor of eIF2; phosphorylated eIF2-GDP forms a stable complex with eIF2B to hamper recycling of eIF2-GDP to eIF2-GTP (2). Scarcity of eIF2-GTP accordingly decreases the level of the ternary complex composed of eIF2, GTP, and the charged initiator tRNA, a prerequisite for translational initiation, and hence leads to general suppression of protein synthesis. Thus, eIF2␣ kinases play pivotal roles in this famous translational control.