To investigate the expression profile of gastric adenocarcinoma, cDNA array experiments were performed using Atlas Human Cancer 1.2 K Array (Clontech Laboratories, Palo Alto, CA) on nine xenografted and two primary gastric cancer samples. The expression of the tumor samples was compared to that of two normal gastric epithelial tissues. The expression pattern of the primary tumors was similar to that of xenografted tumors. The up-regulated genes had expression ratios ranging from 2.5 to 16, whereas the down-regulated genes had a range from ؊2.5 to ؊16. No variation in gene expression was detected in the analysis of the xenografted tumors versus the primary tumors, indicating that the xenografts represented the primary tumors well. Thirtyeight genes showed altered gene expression in 5 or more samples (>45%). Thirty-one genes were up-regulated and seven genes were down-regulated. The most abundantly upregulated genes (ratio >5) included genes such as S100A4, CDK4, MMP14 and beta catenin. The GIF was markedly downregulated (ratio < ؊10). To confirm our findings, six genes (three up-and three down-regulated) were selected for semiquantitative RT-PCR analysis. The RT-PCR results were consistent with the array findings. Our approach revealed that several genes are abnormally expressed in gastric cancer and found that genes known to interact in several common molecular pathway(s) were consistently altered. © 2001 Wiley-Liss, Inc.
Key words: cDNA arrays; gene expression; xenografts; and gastric adenocarcinomasGastric carcinoma (GC) is one of the most common malignancies worldwide and is the second most common cause of cancerrelated death. 1 Overall relative 5-year survival rates are currently less than 20%. Cytogenetic studies of gastric adenocarcinomas are few in number and have failed to identify any consistent or noteworthy chromosomal abnormalities. 2 Comprehensive studies of DNA copy number changes using comparative genomic hybridization (CGH) have revealed alterations in several chromosomal regions. 3-5 Frequent high-level amplifications were noted at 17q and 20q, whereas DNA copy number losses were frequently seen in 4q, 5q, and 9p. However, there are few data on gene expression in gastric cancer. The recent development of cDNA array technology allows the study of gene expression level and gene activation in thousands of genes and sequences. 6,7 The data obtained from the array analysis are expected to uncover novel genes related to cancer development and its clinical behavior. However, tumor sample contamination with normal cells makes analysis of hundreds of genes more difficult and less sensitive. Xenografting of human tumors has been used to produce optimal samples that are enriched for neoplastic cells for subsequent molecular analyses.