“…Immunohistochemistry F I G U R E 1 Flowchart detailing the study design and samples at each stage of analysis. TGCA, The Cancer Genome Atlas; GEO, Gene Expression Omnibus; CIBERSORT, Cell type Identification By Estimating Relative Subsets Of known RNA Transcripts; DFS, disease-free survival was performed as described earlier, 32,33 using monoclonal antibodies against CD3 (SP7), CD8 (4B11), CD45RO (OPD4), CD57 (NK1), tryptase (AA1), CD1A (Ab-5), granulocytes (BM-2), PDPN (D2-40), cytokeratin (AE1AE3), FOXP3 (ab20034; AbCam, Cambridge, United Kingdom) CD68 (PGM-1), CD20 (L26; DAKO, Carpinteria, CA), IL3RA (IL3RA; ATLAS Antibodies, Stockholm, Sweden), CXCR5 and IL-17 (H-132; Santa Cruz Biotechnology, Santa Cruz, CA). Isotype-matched mouse monoclonal antibodies were used as negative controls.…”