To assess whether adiponectin gene (ADIPOQ) polymorphism is associated with intrauterine fetal growth and cord blood adiponectin, we investigated eight single-nucleotide polymorphisms (SNPs; rs182052, rs710445, rs16861205, rs12495941, rs1501299, rs3774261, rs2082940 and rs266729) in ADIPOQ and birth weight and cord blood adiponectin in 526 healthy neonates. We found that the neonates carrying the G allele of rs266729 had a significantly greater birth weight s.d. score than those homozygous for the C allele (CC: À0.06 ± 0.75 versus CG: 0.20 ± 0.64 versus GG: 0.07 ± 0.78; P¼1.65Â10 À3 , adjusted P¼9.90Â10 À3 ). However, this difference was not significant after adjustment for cord blood adiponectin (P¼0.04, adjusted P¼0.26). The rs266729 SNP was strongly associated with cord blood adiponectin; neonates with rs266729 GG had the highest adiponectin (CC: 34.1 ± 20.2 versus CG: 44.3 ± 26.1 versus GG: 54.1 ± 36.7 lg ml -1 , P¼2.80Â10 À9 , adjusted P¼1.68Â10 À8 ). This association remained after adjustment for birth weight s.d. score (P¼6.63Â10 À8 , adjusted P¼3.98Â10 À7 ). Our results suggest that the influence of the rs266729 SNP in ADIPOQ on birth weight may be dependent on circulating adiponectin.