Systems engineering (SE) and SE management is the objective of all SE efforts, which defines the transformation of specific customer needs into a system product, service, or enterprise systems. Enterprise systems of systems engineering apply systems engineering fundamentals to the design of an enterprise. It is created by knowledge, principles, and processes tailored to the design of enterprise systems. Enterprise is a complex, socio-technical system that includes interdependent resources of people, information, and technology to reach a common goal. Enterprise systems is complex that a system configuration can be controlled among the different stakeholders. There are four different steps in enterprise systems process; it includes technology planning (TP), capabilities-based engineering analysis (CBEA), enterprise architecture, and enterprise analysis and assessment. This is the main reason that the enterprise work is developed and established at HAVELSAN Inc., Information and Security Technology Division. SE and technical processes for enterprise projects require establishing a systematic taxonomy and SE process customization. This chapter presents the work done on SE for enterprise projects at HAVELSAN. The chapter presents the results of the study of similarities and differences of the various applications of systems engineering of product systems oriented against enterprise systems.