Androgens play an important role in male sexual differentiation and development. The activity of androgens is mediated by an androgen receptor (AR), which binds to specific DNA recognition sites and regulates transcription. We describe here the isolation of two distinct rainbow trout cDNA clones, designated rtAR-␣ and rtAR-, which contain the entire androgen receptor coding region. Comparison of the predicted amino acid sequence of rtAR-␣ to that of rtAR- revealed 85% identity. Interestingly, despite this high homology, rtAR-␣ activated transcription of an androgen-responsive reporter gene in co-transfection assays, but rtAR- did not. These results suggest that rainbow trout contains two distinct isoforms of androgen receptors whose functions differ. The region of rtAR- responsible for its inactivity was mapped to its ligand binding domain by analyzing chimeras of the rtAR-␣, rtAR-, and rtGR-I (glucocorticoid) receptors. Alteration of any one of three out of four segments within this domain restored activity.Extracts made from COS-1 cells transfected with an rtAR-␣ expression plasmid produced a high level of [ 3 H]mibolerone binding, whereas no binding was observed by extracts of cells transfected with an rtAR- expression plasmid. These data demonstrate that the lack of transactivation activity of rtAR- is due to its inability to bind hormone.In contrast to mammals, fish can undergo gonadal sex inversion in either direction by treatment with exogenous sex steroid if it is applied early enough during development (1, 2). These observations led to the postulate that androgens and estrogens are the substances responsible for sex differentiation of male and female fish, respectively (3), and has resulted in the development of protocols for the masculinization and feminization of large numbers of fish for experimental or economic purposes (1, 4, 5). The androgen receptor (AR) 1 is a critical mediator of male sexual differentiation and development in both fish and mammals. Structurally and functionally, the AR belongs to the superfamily of ligand-responsive transcription modifiers, which encompasses the receptors for the steroid and thyroid hormones. Like other nuclear receptors, steroid receptors are composed of three major functional domains: an NH 2 -terminal hypervariable transcriptional activation domain (TAD), a central highly conserved DNA binding domain (DBD) consisting of two Cys-Cys zinc finger motifs, and a COOH-terminal ligand binding domain (LBD) (6 -9). It has been reported that the AR regulates androgen target genes by binding to a specific DNA sequence, the androgen-responsive element (ARE; consensus ϭ 5Ј-GGTACANNNTGTTCT), which is similar to the glucocorticoid response element (12)(13)(14). The AR can either up-or downregulate the expression of androgen target genes, the outcome probably depending on interactions with specific adapters or co-activators (10, 11).At present, complete AR cDNAs have been cloned only from mammalian species (human, rat, and mouse) (6, 15). We have undertaken the isola...