The aim of this study was to identify patterns of morphological adjustments associated with the Dickson Quality Index (DQI) in Theobroma cacao L. genotypes subjected to water deficit (WD), as a criterion for the pre-selection of drought-tolerant genotypes. Rooted cuttings from seven genotypes were subjected to water deficit (WD). The data from the growth analysis and DQI were subjected to analysis of variance, tests of means, and multivariate analysis. A high correlation was identified between IQD and the variables root dry mass (RDM), leaf dry mass (LDM), stem diameter (SD), and total dry mass (TDM) independently for each genotype; these correlations are more evident in genotypes CP-49, PS-1319, and Cepec-2002. The multivariate analysis divided the genotypes into two major groups: one consisting of the Ipiranga-01, CCN-51, SJ-02, and PH-16 genotypes, and the other comprising the CP-49, Cepec-2002, and PS-1319 genotypes. By correlating the results of the growth analysis with DQI, we were able to identify genotypes CP-49, PS-1319, and Cepec-2002 as tolerant; Ipiranga-01 and CCN-51 as moderately tolerant; and SJ-02 and PH-16 as poorly tolerant to WD. However, it is important that other fields of science are considered to provide greater insights into adaptation to drought.