Sexual dimorphism is common in most vertebrate species and has diverse manifestations. The study of sexual dimorphism has critical significance for evolutionary biological and ecological adaptation. In this study, we analysed the morphometric data of Hynobius maoershanensis, a rare and endangered species, to examine sexual dimorphism in size and shape. A total of 61 H. maoershanensis individuals (9 adult females and 52 adult males) were used in this study. We measured 14 morphological variables and weight of each individual. Analysis of covariance using snout–vent length (SVL) as the covariate showed significant differences in head width (HW), tail length (TL), tail height (TH), forelimb length (FLL), hindlimb length (HLL) and space between axilla and groin (AGS) between the male and female. The female AGS was greater than that of the male, whereas males had greater HW, TL, TH, FLL and HLL than females. The findings show that sexual dimorphism is present in terms of shape but not in terms of size. The wider head of the male could improve mating success, and its thicker limbs and longer tail might facilitate courtship. The females’ wider AGS may increase reproductive output. Our results support sexual dimorphism in H. maoershanensis, which could be explained by the sexual selection and fecundity theory hypothesis.