Background: Escherichia coli can be categorized into four major phylogenetic groups (A, B1, B2, and D) based on presence or absence of three markers including two genes (chuA and yjaA) and an anonymous DNA fragment designated TSPE4.C2. Also, these groups are divided into seven phylogenetic subgroups A 0 , A 1 , B1, B2 2 , B2 3 , D 1 , and D 2 . Objectives: This study aimed to determine the distribution pattern of phylogenetic groups in Shiga Toxin-Producing Escherichia coli (STEC) and Enteropathogenic Escherichia coli (EPEC) isolated from asymptomatic goats in Kerman city, Iran. Materials and Methods: Two hundred and fifty fecal samples were obtained from healthy goats. All isolates were subjected to detection of phylogenetic markers chuA, yjaA and DNA fragment TspE4.C2 and virulence genes stx1, stx2 and eae. Results: In summary, among all isolates phylo-group B1 was the most prevalent (57.6%) and other phylo-groups were A 1 (20.4%), A 0 (18.4%), D 1 (2.8%), and B2 2 (0.8%). There was no isolate in B2 3 and D 2 subgroups. Fifty samples (20%) possessed at least one of the tested virulence genes: stx1 (12%), stx1/stx2 (4%), eae (2.8%), stx1/eae (0.8%), and stx2 (0.4%). Thus, 41 (16.4%) STEC, 7 (2.8%) EPEC, and 2 (0.8%) Enterohemorrhagic Escherichia coli (EHEC) strains were isolated and allocated into four phylogenetic subgroups A 0 (16%), A 1 (12%), B1 (68%), and D 1 (4%). Conclusions: Based on 250 fecal samples obtained from goats in industrial slaughterhouse of Kerman City, goats may be a potential reservoir of STEC in Kerman and B1 followed by A are the most prevalent phylogenetic groups among STEC and non-STEC isolates in this study.