BackgroundEscherichia coli is the most common gram-negative bacteria to cause human infection. The pathological manifestations range from minor disease to severe life threatening sepsis. Urinary tract infection, most often caused by E. coli, is also the most common bacterial infection in humans. Since the inception of antimicrobial therapy in the early 20 th century, E. coli has systematically developed resistance to almost all known antimicrobials, posing a challenge for the treatment of such infections.From a global perspective, the first decade of the 21 st century heralded a change in the epidemiology and tempo of resistance amongst E. coli. Previously, resistance to third generation cephalosporins (3GC) was primarily associated with current or previous healthcare exposure. In the past decade however, expandedspectrum cephalosporin resistant E. coli (ESC-R-EC), usually mediated by Extended Spectrum betalactamase (ESBL) genes has spread widely within the communities of many regions, independent of healthcare associated acquisition.The latter half of this decade has led to the delineation of two further challenges amongst resistant E. coli.The first is the identification of Sequence Type 131 E. coli (ST131), a global 'pandemic' clone fine-tuned for resistance and virulence. This clone is now implicated in a significant proportion of community ESBL E. coli infections globally. The second challenge is the emergence of E. coli harbouring carbapenemase genes, conferring resistance to carbapenem antimicrobials used to treat severe ESBL producing E. coli infection.
MethodsThrough several studies we have aimed to better define global and local aspects of antimicrobial resistant E.coli, in particular ESC-R-EC. The studies have included clinical and laboratory based research.
Clinical research included a multi-centre case-control study of community onset ESC-R-EC infection inAustralia and New Zealand, and a national survey of health services' infection control practices pertaining to multi-resistant gram-negative bacilli and patients at risk of harbouring these.Laboratory research included molecular epidemiological investigation of E. coli from two sources. The first was isolates from the 182 participants in the case-control study, comprising a broad sample of community onset 3GC resistant and susceptible E. coli from Australia and New Zealand. The second was a collection of isolates from a previously conducted study on carriage of resistant E. coli in overseas travellers returning to Australia.Results 182 patients (91 cases and 91 controls) were recruited across six tertiary hospitals in Australia andNew Zealand for the case-control study. Multivariate logistic regression identified risk factors for 3GCR-EC III including birth on the Indian subcontinent (OR=11. 13, 2.17-56.98, p=0.003) being of the recently defined fimH 30 sub-clone variant. Whilst patients with ST131 were significantly more likely to have an upper rather than lower urinary tract infection (relative risk 1.8, p=0.040), they were otherwise rel...