Fibrillar collagen, an essential structural component of the extracellular matrix, is remarkably resistant to proteolysis, requiring specialized matrix metalloproteinases (MMPs) to initiate its remodeling. In the context of native fibrils, remodeling is poorly understood; MMPs have limited access to cleavage sites and are inhibited by tension on the fibril. Here, single-molecule recordings of fluorescently labeled MMPs reveal cleavage-vulnerable binding regions arrayed periodically at ∼1-μm intervals along collagen fibrils. Binding regions remain periodic even as they migrate on the fibril, indicating a collective process of thermally activated and self-healing defect formation. An internal strain relief model involving reversible structural rearrangements quantitatively reproduces the observed spatial patterning and fluctuations of defects and provides a mechanism for tension-dependent stabilization of fibrillar collagen. This work identifies internal-strain-driven defects that may have general and widespread regulatory functions in selfassembled biological filaments.collagenase | matrix metalloproteinase | single molecule | pattern formation | mechanosensing C ollagen comprises over 30% of the protein mass of the human body and is an abundant structural protein in all animals (1). In its most common form, fibrillar collagen assembles from ∼300-nm polypeptide triple helices (tropocollagen) into highly organized, hierarchical networks that provide the protein scaffolding for the extracellular matrix, tendons, bones, and other load-bearing structures (1-3). The triple helix is highly resistant to proteolysis and collagen degradation requires a specialized class of proteases called matrix metalloproteinases (MMPs) (1, 4-6). Only four of the 23 human MMPs can initiate degradation of fibrillar collagen (6, 7). They cleave all three polypeptide chains of tropocollagen asynchronously at a unique thermally labile site located ∼225 nm from the N terminus (8, 9). MMPs play important physiological roles during development and wound healing, promoting cell motility, angiogenesis, and tissue remodeling (6,(10)(11)(12). MMP activity is regulated through gene expression and through binding of specific tissue inhibitors of metalloproteinase (13,14). In addition, MMP activity is regulated by mechanical stress on fibrillar collagen, which inhibits proteolysis through an unknown mechanism (15-17). Dysregulation of MMP activity is implicated in rheumatoid arthritis, atherosclerosis, tumor progression, and metastasis (13,18,19).Despite the importance of collagen remodeling for human health and disease, the mechanistic details of how MMPs degrade fibrillar collagen are not well established. Physiologically relevant collagen fibrils are heterogeneous and insoluble filamentous protein assemblies that are refractory to conventional biochemical analysis (20), yet a spatially extended substrate permits measurements of MMPs moving on fibrillar collagen through fluorescence correlation spectroscopy (20-22) and, more recently, direct single...