The enzyme nitrate reductase (NR) has been proposed as an index of nitrate incorporation rates in marine phytoplankton, but it has proven difficult to interpret NR measurements in field settings because many previous NR assays have been poorly optimized and NR activity in phytoplankton has been poorly characterized under steady state conditions. An NR assay was developed for the diatom Thalassiosira pseudonana using an extraction in phosphate buffer with Triton X-100, EDTA, dithiothreitol, polyvinyl pyrrolidone, and bovine serum albumin. NR activity in homogenates was stable for up to 1 h, but filtered samples could be stored for 96 h in liquid nitrogen without significant loss of activity. Addition of FAD to crude extracts of T. pseudonana had no effect, whereas the effect on desalted extracts or crude extracts from other species, varied from decreases in NR activity to over 250% increases. Half-saturation constants (K,) varied between species; high levels of NADH or nitrate were found to be inhibitory in some cases. These results indicate a wide diversity of forms of NR in marine phytoplankton.Under continuous, light-limited growth, NR activity was quantitatively related to calculated rates of nitrate incorporation (pN) in T. pseudonana, Skeletonema costatum, and three other diatom species examined. The relationship differed for 10 other species; NR activity was equal to bN in some cases, but higher or lower in others. In dinoflagellates, in particular, NR activity was highly correlated with pN, but accounted for ~20% of hN in Amphidinium carterae.The importance of nitrogen metabolism in general, and nitrate metabolism in particular, in the marine environment is based not only on the frequent identification of nitrogen as a nutrient limiting primary production, but also because of the important differences between the fate of production depending on whether newly available nitrogen (e.g. nitrate) or regenerated forms (e.g. ammonium) are used (Dugdale and Goering 1967;Platt et al. 1992). Thus, measurements of rates of nitrate incorporation (sensu Wheeler 1983, i.e. the combination of inorganic nitrogen into large macromolecules such as proteins and nucleic acids) by marine phytoplankton are critical to understanding rates of primary production and biogeochemical cycling in many areas of the oceans.Current methods of estimating rates of nitrate incorporation are based largely on incubation techniques with the stable isotope 15N as a tracer (Dugdale and Wilkerson 1986). It is appreciated that there are problems with this