North Azevedo Pond in Elkhorn Slough, CA is a partially tidally restricted wetland that underwent an experimental ponding manipulation which increased inundation and tidal mixing within the system. This wetland has two spatially significant infaunal microsystems, south and north. Benthic cores taken before and after the manipulation showed that both the south and north infaunal communities remained dominated by the same major taxa, respectively. Both systems, however, experienced species shifts following the ponding manipulation. In the South, the non-native bivalve, Gemma gemma, declined from an average of 19,103 to 385 individuals (m 2)-1 whereas the native clam, Nutricola tantilla, increased from an average of 128 to 26,154 individuals (m 2)-1. In the north, Capitella teleta declined from an average of 15,256 to 1,667 individuals (m 2)-1 , while Pseudopolydora kempi, increased from a mean of 7,436 to 38,077 individuals (m 2)-1. Overall, the hydrographic manipulations were successful in improving water quality by increasing ponding and creating more complex infaunal communities than those present prior to the ponding manipulation. v ACKNOWLEDGMENTS I want to thank the Benthic Lab for sharing their data sets to supplement my own data collection. I want to thank all the taxonomists whom enabled me to power through identifying all of my critters. Thank you to my two interns, Imani and Enio, for their hard work ethic and taxonomic prowess. Lastly, thank you to all the folks at ESNERR and ESF for helping me carry out my thesis project with data, background information, and access to my study site. Crucial funding for this thesis came from San Jose State University, CCR, and Myers Ocean Trust. Thank you to my committee members especially John Oliver for his refreshingly unconventional style of advising. I am inspired by his vast knowledge of the natural world, and I hope to know even a little bit of what he knows by the end of my lifetime. This thesis would not have been possible without my unofficial advisor, Kamille Hammerstrom. I will never forget her kindness, patience, and willingness always to set aside time to help me with any aspect of my thesis. Most importantly, I'd like to thank my family. Mom, it means so much to me that you have always shown me unwavering love and support towards me. Katherine, Carolyn, and Evelyn, you are all so dear to me, and I am grateful for the love and respect you give me. Lastly, thank you Corey, for being there for me through the last haul of my thesis, and for keeping me focused at the task at hand. vii TABLE OF CONTENTS LIST OF TABLES .