Self-assembled peptide/polypeptide nanofibers are appealing building blocks for creating complex three-dimensional structures. However, ordering assembled peptide/polypeptide nanofibers into three-dimensional structures on the microscale remains challenging and often requires the employment of top-down approaches. We report that silk-elastin-like protein polymers selfassemble into nanofibers in physiologically relevant conditions, the assembled nanofibers further form fiber clusters on the microscale, and the nanofiber clusters eventually coalesce into threedimensional structures with distinct nanoscale and microscale features. It is believed that the interplay between fiber growth and molecular diffusion leads to the ordering of the assembled silk-elastin-like nanofibers at the microscale. V C 2014 AIP Publishing LLC.[http://dx.doi.org/10.1063/1.4863077] Self-assembled peptide/protein nanostructures may find important applications in various areas, including tissue engineering, biosensors, and drug delivery. As an example, self-assembled peptide nanofibers enable the cells to interact with the matrix in three-dimensional microenvironments, enhancing neurite outgrowth. 1 However, it remains a daunting challenge to order self-assembled peptide nanofibers into three-dimensional structures on the microscale. It has been suggested to integrate top-down approaches and selfassembly in the fabrication of microscale-ordered nanostructures. 2 Nevertheless, this strategy not only requires additional capital investment in fabrication facilities but also comprises the elegance of molecular self-assembly, including ease of processing and energy efficiency. Here, we report that, driven by the interplay of fiber nucleation/growth with molecular diffusion, silk-elastin-like protein (SELP) polymers self-assemble into three-dimensional structures with distinct nanoscale and microscale features.Owing to relative ease of design, synthesis, and purification, most self-assembling peptides that have been extensively explored are small peptides, containing several to a few tens of amino acids. 3 In contrast, living systems often utilize high molecular-weight proteins, such as actin and collagen, as building blocks to create nanofiber-based intracellular and extracellular matrices. 4 Likely, large amino acid chains provide a rich source of structural/functional variability and complexity. Herein, two SELP polymers, SELP-47 K (MW: 69,814 theoretical calculation 5 and 69 699 mass spectroscopy 6 ) and SELP-815 K (MW: 65 374 theoretical calculation 7 ), are used as a model system to study self-assembly of high molecular-weight proteins. The complete amino acid sequences of SELP-47K and SELP-815 K are MDPVVLQRRDWENPGVTQLNRLAAHPPFASDPMGAG SGAGAGS[(GVGVP) 4 GKGVP(GVGVP) 3 (GAGAGS) 4 ] 12 (GVGVP) 4 GKGVP(GVGVP) 3 (GAGAGS) 2 GAGAMDPGR YQDLRSHHHHHH (one letter amino-acid abbreviation is used) 5 and MDPVVLQRRDWENPGVTQLNRLAAHPPF ASDPM[GAGS(GAGAGS) 2 (GVGVP) 4 GKGVP(GVGV P) 11 (GAGAGS) 4 GAGA] 6 MDPGRYQDLRSHHHHHH, respectively. 6 In the design of SE...