The capabilities of a commercial ion trap mass spectrometer to readily perform chemical ionization experiments have been exploited to account for the restrictions of the instrument to perform low-energy ($10 eV) electron ionization (EI) experiments. CS 2 and benzene have been used as representative reagent compounds for low-energy ionization by charge exchange in the ion trap with the main objective being the production of mass spectra of hydrocarbon compounds with intense peaks in the molecular ion region. nPentane was used as a representative small alkane reagent compound to investigate its capability to form intense peaks of molecular ion species in the spectra of saturated hydrocarbons. No intense peaks were produced in the molecular ion region, by any of the three reagents, for the mass spectra of model linear saturated hydrocarbons. The relatively weak stability of these compounds and the excess amounts of internal energy supplied by the various dynamic processes in the ion trap may partly account for the increased fragmentation. Intense molecular ion species and fragment ion peaks were observed in the mass spectra of cyclic saturated hydrocarbons. Charge exchange of aromatic compounds with CS 2 and benzene produced mass spectra with intense molecular ion peaks and limited fragmentation, similar to the mass spectra obtained in conventional mass spectrometers. The methods developed in this study were used for the analysis of typical middle distillate and heavy petroleum samples. # 1998 John Wiley & Sons, Ltd. Received 8 January 1998; Revised 2 February 1998; Accepted 3 February 1998 Rapid Commun. Mass Spectrom. 12, 373-381 (1998 The quadrupole ion trap mass spectrometer combines several important analytical features. These are: (i) excellent sensitivity for quantitative analysis, [1][2][3][4] (ii) capabilities for chemical ionization and tandem mass spectrometry (MS/MS), 4-7 and (iii) reduced size, weight and cost compared to other instruments with similar capabilities (i.e. sector, quadrupole filter analyzers). Chemical ionization (CI) and tandem mass spectrometry greatly enhance the selectivity of analysis. Different reagent compounds can be used in chemical ionization experiments to selectively ionize compounds based on thermochemical criteria. 8 Typically, exothermic ion-molecule reactions between chemical ionization reagent ions and analyte molecules are associated with large rate constants and can lead to the formation of abundant reaction products. Endothermic reagent ion-analyte molecule reactions are generally associated with small rate constants and do not lead to the formation of abundant product ions. The choice of appropriate reagent compounds can thus selectively permit the analysis of certain classes of compounds. For example, the use of ammonia as chemical ionization reagent gas is typically used for the selective ionization of very basic compounds 8,9 and has been successfully used in ion trap CI experiments for the characterization of nitrogen and sulfur heterocycles in petroleum fractions...