Molecular simulation of single chain in the vicinity of nanoparticle in comparison with
pure system is presented. According to the Rouse theory, chains were considered as a sequence of
beads connected together by harmonic springs. The motion of atoms was supported by thermal energy
and retarded by the resistance of surrounding. New atom position, in given time, was determined by
the Smoluchowski equation, that consists of two terms: first one includes the influence of the
inter-atomic collisions, the sterical obstacles and the strong intermolecular interactions in friction
coefficient, second one express the energy field aggregated from potentials of all atoms. Sinusoidal
shear stress was applied to the chain. The output of the model was energy as a function of time. The
energy course was also sinusoidal but shifted according to the deformation. The amplitudes and phase
shifts were analyzed for the chains under different conditions .The chains were subjected to the model
first as the standalone objects. Then, barrier was defined and chains placed in the vicinity of it. The
barrier acted as a volume excluded hindrance. This type of chain molecular dynamics could be used as
a stand-alone model or it could be suitable component for complex models, for example network
model of polymer nanocomposite.