2021
DOI: 10.1029/2021ms002647
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Simulations With the Marine Biogeochemistry Library (MARBL)

Abstract: The Marine Biogeochemistry Library (MARBL) is a prognostic ocean biogeochemistry model that simulates marine ecosystem dynamics and the coupled cycles of carbon, nitrogen, phosphorus, iron, silicon, and oxygen. MARBL is a component of the Community Earth System Model (CESM); it supports flexible ecosystem configuration of multiple phytoplankton and zooplankton functional types; it is also portable, designed to interface with multiple ocean circulation models. Here, we present scientific documentation of MARBL,… Show more

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Cited by 67 publications
(87 citation statements)
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References 149 publications
(213 reference statements)
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“…Phytoplankton responses to climate change in the Southern Ocean also agree. In a CCSM (Community Climate System Model, a previous version of CESM) simulation run under a high emission scenario, diatom growth rates increased in the subpolar region of the Southern Ocean (Marinov et al, 2010), as did diatom productivity in simulations with the latest version of CESM (CESM version 2; Long et al, 2021).…”
Section: Discussionmentioning
confidence: 99%
“…Phytoplankton responses to climate change in the Southern Ocean also agree. In a CCSM (Community Climate System Model, a previous version of CESM) simulation run under a high emission scenario, diatom growth rates increased in the subpolar region of the Southern Ocean (Marinov et al, 2010), as did diatom productivity in simulations with the latest version of CESM (CESM version 2; Long et al, 2021).…”
Section: Discussionmentioning
confidence: 99%
“…When oxygen concentration is <5 μM, nitrate is consumed rather than oxygen during the remineralization of this organic matter (J. K. Moore & Doney, 2007). The model has one class of explicit, iron‐binding ligands and external iron sources from atmospheric deposition (pyrogenic and mineral dust sourced iron), marine sediments, hydrothermal vents, and riverine inputs (Long et al., 2021; J. K. Moore & Braucher, 2008). We ran the simulations with constant pre‐industrial CO 2 for 300 years and averaged the results over the last 20 years of the simulation.…”
Section: Methodsmentioning
confidence: 99%
“…The ratio of coarse/fine dust at deposition is a useful proxy for the distance traveled from the mineral dust source regions, as the coarse dust particles are expected to be removed more quickly during atmospheric transport. The dust iron solubility in CESM2 is a function of the ratio of coarser dust particle deposition/finer dust particle deposition (Long et al., 2021). The approach gives low solubilities near dust sources (∼0.5%) increasing to greater than 10% in the most remote regions in the central Pacific, capturing the observed relationship between deposition rate and iron solubility seen in observations (Sholkovitz et al., 2012).…”
Section: Methodsmentioning
confidence: 99%
“…where I s and I c are the daily-averaged saturating and compensating irradiance (W/m 2 ), f is the fraction of daylight that is implemented to account for periods of darkness, and I is the irradiance reaching an underwater depth of 2 m. The irradiance is attenuated following the implementation in the Marine Biogeochemistry Library (MRBL) 77,78 .…”
Section: Growthmentioning
confidence: 99%