Single-cell RNA sequencing reveals in vivo osteoimmunology interactions between the immune and skeletal systems

Abstract

BackgroundWhile osteoimmunology interactions between the immune and skeletal systems are known to play an important role in osteoblast development, differentiation and bone metabolism related disease like osteoporosis, such interactions in either bone microenvironment or peripheral circulation in vivo at the single-cell resolution have not yet been characterized.MethodsWe explored the osteoimmunology communications between immune cells and osteoblastic lineage cells (OBCs) by performing CellphoneDB and CellChat analyses with single-cell RNA sequencing (scRNA-seq) data from human femoral head. We also explored the osteoimmunology effects of immune cells in peripheral circulation on skeletal phenotypes. We used a scRNA-seq dataset of peripheral blood monocytes (PBMs) to perform deconvolution analysis. Then weighted gene co-expression network analysis (WGCNA) was used to identify monocyte subtype-specific subnetworks. We next used cell-specific network (CSN) and the least absolute shrinkage and selection operator (LASSO) to analyze the correlation of a gene subnetwork identified by WGCNA with bone mineral density (BMD).ResultsWe constructed immune cell and OBC communication networks and further identified L-R genes, such as JAG1 and NOTCH1/2, with ossification related functions. We also found a Mono4 related subnetwork that may relate to BMD variation in both older males and postmenopausal female subjects.ConclusionsThis is the first study to identify numerous ligand-receptor pairs that likely mediate signals between immune cells and osteoblastic lineage cells. This establishes a foundation to reveal advanced and in-depth osteoimmunology interactions to better understand the relationship between local bone microenvironment and immune cells in peripheral blood and the impact on bone phenotypes.

Identification of mitophagy-related biomarkers in human osteoporosis based on a machine learning model

“…Disorders in Notch signaling are related to human diseases that affect bones. Wang et al identified JAG1 and NOTCH1 as L-R genes with ossificationrelated functions using single-cell RNA sequencing, which further confirmed the inevitable relationship between the two and osteoporosis (Wang S. et al, 2023). Through animal experiments, Hui et al found that the targeted inhibition of JAG1/ NOTCH1 signal transduction can promote poor osteogenic differentiation of bone marrow mesenchymal stem cells (Han et al, 2022).…”