2022
DOI: 10.1101/2022.01.01.474510
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Single-cell transcriptome reveals the redifferentiation trajectories of the early stage of de novo shoot regeneration in Arabidopsis thaliana

Abstract: De novo shoot regeneration from a callus plays a crucial role in both plant biotechnology and the fundamental research of plant cell totipotency. Recent studies have revealed many regulatory factors involved in this developmental process. However. our knowledge of the cell heterogeneity and cell fate transition during de novo shoot regeneration is still limited. Here, we performed time-series single-cell transcriptome experiments to reveal the cell heterogeneity and redifferentiation trajectories during the ea… Show more

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Cited by 5 publications
(1 citation statement)
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References 70 publications
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“…More recently, short-read RNA-seq has been pushed to single-cell resolution due to a series of technological advancements, including robotics, microfluidics and hydrogel droplets ( Zhang et al., 2019 ). In a few years, efforts in single-cell RNA-seq (scRNA-seq) or single-nuclei RNA-seq (snRNA-seq) have expanded from model plants (Arabidopsis, tomato and rice) to non-model species (e.g., maize and poplar), from organ development and cell differentiation to wood formation ( Gutzat et al., 2020 ; Xu et al., 2020 ; Li et al., 2021 ; Kajala et al., 2021 ; Chen et al., 2021a ; Wang et al., 2021 ; Bezrutczyk et al., 2021 ; Liu et al., 2022 ). Undoubtedly, single-cell transcriptomics are leading the fore frontier of plant single-cell biology and playing an ever-increasing role in plant research and breeding.…”
Section: Discussion and Concluding Remarksmentioning
confidence: 99%
“…More recently, short-read RNA-seq has been pushed to single-cell resolution due to a series of technological advancements, including robotics, microfluidics and hydrogel droplets ( Zhang et al., 2019 ). In a few years, efforts in single-cell RNA-seq (scRNA-seq) or single-nuclei RNA-seq (snRNA-seq) have expanded from model plants (Arabidopsis, tomato and rice) to non-model species (e.g., maize and poplar), from organ development and cell differentiation to wood formation ( Gutzat et al., 2020 ; Xu et al., 2020 ; Li et al., 2021 ; Kajala et al., 2021 ; Chen et al., 2021a ; Wang et al., 2021 ; Bezrutczyk et al., 2021 ; Liu et al., 2022 ). Undoubtedly, single-cell transcriptomics are leading the fore frontier of plant single-cell biology and playing an ever-increasing role in plant research and breeding.…”
Section: Discussion and Concluding Remarksmentioning
confidence: 99%