We present a detailed powder and single crystal neutron diffraction study of the spin chain compound Ca3Co2O6. Below 25 K, the system orders magnetically with a modulated partially disordered antiferromagnetic structure. We give a description of the magnetic interactions in the system which is consistent with this magnetic structure. Our study also reveals that the long-range magnetic order co-exists with a shorter range order with a correlation length scale of ∼ 180Å in the ab plane. Remarkably, on cooling, the volume of material exhibiting short range order increases at the expense of the long-range order.PACS numbers: 75.30. Gw, 75.25.+z, 75.30.Fv, 75.50.Ee The appearance of plateaux in the magnetization curves of low dimensional quantum spin systems (e.g. NH 4 CuCl 3 [1] and SrCu 2 (BO 3 ) 2 [2]) has generated considerable attention from both an experimental and a theoretical point of view. In this respect the spin chain system Ca 3 Co 2 O 6 is very interesting because at low temperatures several steps, equally spaced in magnetic field, appear in the magnetization [3,4,5], a behavior reminiscent of quantum tunneling of magnetization in molecular magnets [6]. The origin of this intriguing phenomenon is still an open question [7,8] and the magnetic properties of Ca 3 Co 2 O 6 have been intensely studied in the past decade using many techniques, including x-ray [9,10,11] and neutron [12,13,14] Ca 3 Co 2 O 6 is a rare example of a material where ferromagnetic (FM) 1D Ising spin chains are coupled through a much weaker antiferromagnetic (AF) exchange on a triangular lattice. The spin chains in Ca 3 Co 2 O 6 are made up of alternating face-sharing octahedral (CoI) and trigonal prismatic (CoII) CoO 6 polyhedra, running along the c axis and arranged in a triangular lattice in the ab plane [17]. The different Co environments leave the Co 3+ ions on the CoI sites in a low-spin (S=0) state, and those on the CoII sites in the high-spin (S=2) state [9,11,15]. Crystalline electric fields also lead to a very strong anisotropy with the moments preferentially aligned along the c axis [3,4]. The zero-field magnetic structure of Ca 3 Co 2 O 6 has yet to be described unambiguously. Most theoretical descriptions of the magnetic structure center around the two stable configurations for 1D Ising chains coupled antiferromagnetically on a 2D triangular lattice, the ferrimagnetic structure (M, M, −M ) and the partially disordered antiferromagnetic (PDA) structure (M, −M, 0) [18] (the labels in parenthesis indicate the relative magnetizations on the triangular lattice). The step-like magnetization has been described using the Ising model on a triangular lattice [7]. There are, however, experimental data which suggest a more complex magnetic structure for Ca 3 Co 2 O 6 . A pronounced drop in the intensity of the magnetic peaks on cooling below 18 K in zero field has been observed in powder [12,13] and single crystal diffraction studies [14]. Recent resonant x-ray scattering (RXS) studies [10] showed a small (∼ 0.01Å −1 ) incommensu...