With the recent advances in structure determination of the troponin complex, it becomes even more important to understand the dynamics of its components and how they are affected by the presence or absence of Ca 2؉ . We used NMR techniques to study the backbone dynamics of skeletal troponin C (TnC) in the complex. Transverse relaxation-optimized spectroscopy pulse sequences and deuteration of TnC were essential to assign most of the TnC residues in the complex. Backbone amide 15 N relaxation times were measured in the presence of Ca 2؉ or EGTA/Mg 2؉ . T 1 relaxation times could not be interpreted precisely, because for a molecule of this size, the longitudinal backbone amide 15 N relaxation rate due to chemical shift anisotropy and dipole-dipole interactions becomes too small, and other relaxation mechanisms become relevant. T 2 relaxation times were of the expected magnitude for a complex of this size, and most of the variation of T 2 times in the presence of Ca 2؉ could be explained by the anisotropy of the complex, suggesting a relatively rigid molecule. The only exception was EF-hand site III and helix F immediately after, which are more flexible than the rest of the molecule. In the presence of EGTA/Mg 2؉ , relaxation times for residues in the C-domain of TnC are very similar to values in the presence of Ca 2؉ , whereas the N-domain becomes more flexible. Taken together with the high flexibility of the linker between the two domains, we concluded that in the absence of Ca 2؉ , the N-domain of TnC moves independently from the rest of the complex.The troponin (Tn) 1 complex is responsible for the regulation of contraction in striated skeletal and cardiac muscles. Although many structural studies have been done of pairwise interactions between components of the complex (for reviews see Refs. 1-4), the details at an atomic level of how the complex works as a whole have not as yet been fully elucidated. Recent determination of the crystal structure of cardiac troponin (5) has revealed an apparently quite flexible complex. This has focused interest on the need for dynamics information on the troponin complex in order to properly interpret the structural data.The three components of Tn, troponins I, C, and T, are responsible for inhibiting muscle contraction in the absence of Ca 2ϩ , sensing the change in intracellular Ca 2ϩ levels, releasing the inhibition in the presence of Ca 2ϩ , and transmitting this information to the other components of muscle thin filaments, respectively (for a recent review see Ref.2). Troponin C (TnC) is a Ca 2ϩ -binding protein containing two domains connected by a linker. The linker is a straight ␣-helix in the crystal structure of isolated TnC (6 -8) but is flexible in solution (9). Each domain contains two EF-hand metal-binding sites, and the helices that flank those sites are named A to D in the N-domain and are named E to H in the C-domain. An extra helix at the N terminus is named N. The sites in the N-domain are Ca 2ϩ -specific and important for the regulation of muscle contract...