2 is one of the essential components of the photosystem II (PSII) in higher plants, green algae, and cyanobacteria (1-5). cyt b 559 is a heme-bridged heterodimer protein that is composed of one ␣-and one -subunit (encoded by the psbE and psbF genes) of 9 and 4 kDa, respectively. Each subunit provides a His ligand (His-22 residue of ␣-or -subunit of cyt b 559 ) for the non-covalently bound heme. In addition, cyt b 559 exhibits different redox potential forms; a high potential form with a midpoint redox potential around ϩ400 mV, an intermediate potential form around ϩ200 -250 mV, and a low potential form with a midpoint redox potential about ϩ50 -100 mV (Refs. 5-9 and references therein). Several previous studies have proposed that cyt b 559 participates in secondary electron transfer pathways, which protect PSII from photoinhibition (5, 10 -12). In these models the high potential form of cyt b 559 might donate its electron to reduce highly oxidized chlorophyll radical species generated in PSII reaction centers under the donor-side photoinhibitory conditions. On the other hand, cyt b 559 might accept an electron from the acceptor side of PSII (Q B , PQ, or pheophytin (primary pheophitin a electron acceptor)) from generating damaging singlet oxygen species under the acceptor-side photoinhibitory conditions (13-15). In addition, a novel quinonebinding site (Q C ) was identified in proximity to cyt b 559 in the new 2.9Å PSII crystal structure (4). The occupancy of this Q C site has been proposed to modulate the redox equilibration between cyt b 559 and the PQ pool (16,17) or to involve in the exchange of PQ on the Q B site from the pool (4). Despite the recent progress in understanding the structure and function of PSII, the exact function of cyt b 559 in PSII remains unclear.Prior mutagenesis studies with Synechocystis sp. PCC6803, Chlamydomonas reinhardtii, or Nicotiana tabacum showed no stable PSII reaction centers assembled in the absence of either cyt b 559 subunit (18 -24). In addition, an early site-directed mutagenesis study with Synechocystis 6803 showed that substituting either of the heme axial ligands (His-22 of the ␣-subunit or His-22 of the -subunit) with Leu severely diminished the assembly or stability of PSII (23). Furthermore, another sitedirected mutagenesis study involving C. reinhardtii showed that the H22Y and H22M mutants of the cyt b 559 ␣ subunit accumulated 10 -15% of the PSII (compared with wild-type cells) and contained a disrupted heme pocket, whereas still retaining significant amounts of O 2 evolution activity (24). This