Our previous study on second-site suppressor mutations of the Tn10-encoded metal-tetracycline/H ؉ antiporter suggested that Leu 30 and Ala 354 , located in periplasmic loop 1-2 and 11-12, respectively, are conformationally linked to each other (Kawabe, T., and Yamaguchi, A. (1999) FEBS Lett. 457, 169 -173). To determine the spatial proximity of these two residues, crosslinking gel-shift assays of the L30C/A354C double mutant were performed after the mutant had been oxidized with Cu 2؉ /o-phenanthroline. The results indicated that Leu 30 and Ala 354 are close to each other but that Gly 62 , which is located in cytoplasmic loop 2-3, and Ala 354 are distant from each other, as a negative control. Then, a single Cys residue was introduced into each of the six periplasmic loop regions (P1-P6), and eleven double mutants were constructed. Of these eleven double Cys mutants, the L30C/A354C and L30C/T235C mutants showed a mobility shift on oxidation, indicating that P1 is spatially close to P4 as well as P6. In contrast, the other nine mutants, L30C/S92C, L30C/S156C, L30C/S296C, S92C/ S296C, S92C/T235C, S92C/A354C, S156C/T235C, S156C/ S296C, and S156C/A354C, showed no mobility shift under oxidized conditions on intramolecular cross-linking. The S92C and S296C mutants showed dimerization on intermolecular cross-linking, indicating that P2 and P5 are located at the periphery of the helix bundle.1 is a typical bacterial drug export protein (2, 3), and its molecular mechanism and molecular structure have been studied as a paradigm of antiporter-type drug exporters including bacterial multidrug exporters (4 -6). TetA(B) belongs to a major facilitator superfamily (MFS) (7); however, the direction of the coupling of substrate transport with protons is opposite to that in the case of MFS symporters such as lactose permease.The transmembrane helix arrangement in lactose permease has been extensively studied by use of double Cys mutants as an alternative means of three-dimensional structure prediction without x-ray crystallographic analysis (8 -10). It is of interest to find out whether antiporters and symporters are the same with regard to the fundamental molecular construction or whether the difference in the coupling direction reflects the helix arrangement. The twelve-transmembrane structure of TetA(B) has been experimentally confirmed (11), and the exact range of each transmembrane segment was determined on the basis of site-directed chemical modification of cysteine-scanning mutants (12-15). To evaluate the mutual proximity of transmembrane helices of TetA(B), we introduced a Cys residue into each periplasmic loop on the basis of a Cys-free mutant.To obtain double Cys combinations, we first looked for a pair for which close proximity was expected. In our previous paper (1), we reported that both G62L, which is in cytoplasmic loop 2-3, and G332S, which is in cytoplasmic loop 10 -11, are suppressed by the second-site mutations of both L30S and A354D, which are located in periplasmic loop 1-2 and loop 11-12, respectively. G62L...