Sleep has been functionally implicated in brain energy homeostasis in that it could serve to replenish brain energy stores that become depleted while awake. Sleep deprivation (SD) should therefore lower brain glycogen content. We tested this hypothesis by sleep depriving mice of three inbred strains, i.e., AKR/J (AK), DBA/2J (D2), and C57BL/6J (B6), that differ greatly in their sleep regulation. After a 6-h SD, these mice and their controls were killed by microwave irradiation, and glycogen and glucose were quantified in the cerebral cortex, brain stem, and cerebellum. After SD, both measures significantly increased by ϳ40% in the cortex of B6 mice, while glycogen significantly decreased by 20-38% in brain stem and cerebellum of AK and D2 mice. In contrast, after SD, glucose content increased in all three structures in AK mice and did not change in D2 mice. The increase in glycogen after SD in B6 mice persisted under conditions of food deprivation that, by itself, lowered cortical glycogen. Furthermore, the strains that differ most in their compensatory response to sleep loss, i.e., AK and D2, did not differ in their glycogen response. Thus glycogen content per se is an unlikely end point of sleep's functional role in brain energy homeostasis.mouse; sleep function and regulation; brain glycogen; glucose; energy homeostasis; food deprivation; halothane anesthesia COMPARED WITH WAKEFULNESS, non-rapid-eye-movement sleep (NREMS) is accompanied by a decrease in brain metabolism (reviewed in Ref. 26). These observations have led to several hypotheses concerning a functional link between sleep and energy homeostasis in the brain. We have advanced a hypothesis integrating both functional and regulatory aspects regarding sleep (3). As to sleep function, we proposed that cerebral glycogen stores, the most important energy store in the brain (19), are progressively depleted during wakefulness and have to be replenished during NREMS. As to sleep regulation, we implicated adenosine as a molecular feedback signal for sleep need (reviewed by Refs. 3,33,35). We proposed that glycogen depletion enhances extracellular adenosine release, thereby promoting sleep onset, sleep continuity, and NREMS delta power [i.e., EEG power in the 1-to 4-Hz range, a marker of NREMS need (5, 6, 12)].A sleep-regulatory role for adenosine has gained considerable support (reviewed by Ref. 33). A functional role for sleep in regulating glycogen content has received less attention. Recently, two studies directly tested this hypothesis by comparing brain glycogen between sleep-deprived and control rats. The results were inconclusive. In one study, a decrease in glycogen was observed throughout most of the brain of adult rats sleep deprived for 12 h or longer (21), thus supporting our hypothesis. In a developmental study from our own laboratory, glycogen was found to decrease after sleep deprivation (SD) in the cerebellum but not in the cortex of 24-to 50-day-old rats (15). Moreover, in 59-day-old rats (the oldest age group studied), glycogen increased i...