Prolonged drought conditions in New Mexico have led growers to use brackish groundwater for crop irrigation. Desalination of the groundwater with reverse osmosis (RO) is possible, but the concentrated waste requires environmentally safe disposal, such as by irrigating native halophytic plants, Atriplex, which could be cultivated to feed livestock. We hypothesized that ions from the brackish irrigation would increasingly accumulate in the soil away from the roots as the wetting front expanded further from the emitter, while not affecting the aboveground growth of the plants. Atriplex species were irrigated with brackish water at two irrigation levels for three years. Soil samples were collected at the beginning, middle, and end of the study at two depths and three distances from the emitter. Electrical conductivity (EC), soil ion accumulation, and plant growth were recorded. The average EC of the soil increased with brackish water irrigation. As the ions accumulated along the wetting front of the percolating water rather than near roots, a favorable environment for root growth was provided. While sodic levels of ion accumulation were not reached in this study, aboveground growth still declined. This leads to the recommendation that RO-concentrated waste could be used to irrigate Atriplex species for livestock fodder, with further plans to irrigate with fresh water to remove accumulated ions as a potential sustainable waste management process. Additional studies are necessary to develop guidelines for Atriplex tolerance and harvesting.