Microbes are tiny organisms that are present in our bodies, food, and environment. They are bacteria, fungi, viruses, protozoans, etc. Microbes show distinct functional features in different hosts and environments. This gives rise to the term "microbiome," which is defined as the group of microorganisms residing in a particular system and showing distinct physical and chemical properties, establishing specific ecological niches that are dynamic in nature and vary in different time and space. The composition of microbiomes vary according to different hosts and environments. For example, microbial diversity in the human microbiome is only 10% to that found in the soil microbiome, and the soil microbiome largely consists of bacteria, fungi, archaea, viruses, small protists, and algae (Blum et al., 2019). A gram of soil contains more than 100 million to a billion microorganisms, and less than 1% of these have been characterized (Daniel, 2005;Raynaud & Nunan, 2014). Based on different environments and hosts, microbiomes can be commensal, symbiotic, or parasitic. In this article, we are going to focus on beneficial microbes.Microbial diversity can be explained as the various range of microbial species, including Bacteria, Archaea, Fungi, Protista, etc. Under the soil ecosystem, bacteria are the most abundant microbial communities, followed by archaea, fungi, etc. (Siles et al., 2018). Microbiomes provide several benefits such as nutrient mobilization and recycling, water holding, organic matter decomposition, high organic carbon and nitrogen content, aeration and fertilizer mobilization, and increased plant productivity and resilience to climate change in agricultural and ecosystem ecology.