The transformation of the mineral ferrihydrite in reducing environments, and its impact on the mobility of incorporated trace metals, has been investigated in model laboratory studies, but studies using complex soil or sediment matrices are lacking. Here, we studied the transformation of zinc (Zn)-bearing ferrihydrite labeled with 57 Fe and mixed with natural sediments, incubated in reducing conditions for up to six months. We tracked the evolution of Fe and Zn speciation with 57 Fe Mossbauer spectroscopy and with bulk and micro-X-ray absorption spectroscopy. We show that Fe was readily reduced and incorporated into a poorly crystalline mixed-valence Fe(II)− Fe(III) phase resembling green rust. In parallel, Zn was released in the surrounding porewater and scavenged by precipitation with available ligands, particularly as zinc sulfide (ZnS) or Zncarbonates. Early in the mineral transformation process, the chemical behavior of Fe was decoupled from Zn, suppressing the impact of Zn on the rates and products of the ferrihydrite transformation. Our results underline the discrepancy between model experiments and complex field-like conditions and highlight the importance of sediment and soil geochemistry and ligand competition on the fate of divalent metal contaminants in the environment.