A procedure for the purification of 3-hydroxy-3-methylglutaryl-coenzyme A reductase [mevalonate: NADP+ oxidoreductase (CoA-acylating), EC 1.1.1.341 solubilized from rat liver microsomes is reported. This enzyme has a specific activity of 9,000-10,000 nmol of mevalonate formed per min/mg of protein. This represents a 4100 fold purification over the activity in microsomes, and a specific activity that is approximately 20-fold greater than the highest previously reported value. The enzyme is judged to be homogeneous on the basis of sodium dodecyl sulfate/polyacrylamide disc gel electrophoresis, polyacrylamide disc gel electrophoresis, and immunoanalysis. Data are also presented that indicate the separation of enzymatically active and inactive species of 3-hydroxy-3-methylglutaryl-coenzyme A reductase on affinity chromatography on a coenzyme A column.3-Hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase [mevalonate:NADP+ oxidoreductase (CoA-acylating); EC 1.1.1.34] catalyzes the reduction of HMG-CoA to mevalonic acid, the rate-limiting step of cholesterol biosynthesis in liver (1-3). Therefore, a number of researchers have focused their attention on the regulation of this enzyme. However, to study the modulation of HMG-CoA reductase under various physiological states a method is required to quantitate the amount of enzyme present. This can be achieved by either direct isolation of the enzyme by a reproducible purification procedure or by immunoprecipitation using monospecific antiserum to the enzyme.A number of procedures have been reported for the solubilization and partial purification of HMG-CoA reductase from the microsomal membrane (4-8). In addition, workers in three laboratories have reported the preparation of enzyme that yields only one band on immunodiffusion or sodium dodecyl sulfate (NaDodSO4) disc gel electrophoresis (9-11). However, the enzyme activities of these preparations were very low (10-516 nmol of mevalonate formed per min/mg of protein).In a previous study (12) we succeeded in purifying yeast HMG-CoA reductase to homogeneity. This enzyme had a specific activity of approximately 10,000 nmol of mevalonate formed per min/mg of protein. In this paper we report the purification of HMG-CoA reductase from rat liver by a combination of standard protein fractionation steps and coenzyme A affinity chromatography. This preparation also has a specific activity of 9,000-10,000 nmol of mevalonate formed per min/mg of protein. This value is approximately 20-fold greater than the best value previously reported.As a part of this study we also show that enzymatically active and inactive species of HMG-CoA reductase are separated by affinity chromatography. This separation suggests the possibility that cholesterol synthesis may be regulated in vvo by the interconversion of these species.MATERIALS AND METHODS Materials. Chemicals were obtained from the following sources: 3-hydroxy-3-methyl[3-'4C]glutaric acid, New England Nuclear; coenzyme A, thioester-linked agarose-hexane-coenzyme A, and dithiothrei...