In this study, we have investigated the structure of the native myelin proteolipid protein (PLP), DM-20 protein and several low molecular mass proteolipids by mass spectrometry. The various proteolipid species were isolated from bovine spinal cord by size-exclusion and ion-exchange chromatography in organic solvents. Matrix-assisted laser desorption ionizationtime of flight-mass spectrometry (MALDI-TOF-MS) of PLP and DM-20 revealed molecular masses of 31.6 and 27.2 kDa, respectively, which is consistent with the presence of six and four molecules of thioester-bound fatty acids. Electrospray ionization-MS analysis of the deacylated proteins in organic solvents produced the predicted molecular masses of the apoproteins (29.9 and 26.1 kDa), demonstrating that palmitoylation is the major post-translational modification of PLP, and that the majority of PLP and DM-20 molecules in the CNS are fully acylated. A series of myelin-associated, palmitoylated proteolipids with molecular masses raging between 12 kDa and 18 kDa were also isolated and subjected to amino acid analysis, fatty acid analysis, N-and C-terminal sequencing, tryptic digestion and peptide mapping by MALDI-TOF-MS. The results clearly showed that these polypeptides correspond to the N-terminal region (residues 1-105/112) and C-terminal region (residues 113/131-276) of the major PLP, and they appear to be produced by natural proteolytic cleavage within the 60 amino acid-long cytoplasmic domain. These proteolipids are not postmortem artifacts of PLP and DM-20, and are differentially distributed across the CNS. Keywords: mass spectrometry, myelin, palmitoylation, proteolipid protein, proteolysis. (Macklin et al. 1987;Nave et al. 1987). In addition to these species, sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of brain proteolipids reveals the presence of minor low molecular weight forms (LMWPs, 12-18 kDa) (Lees and Bizzozero 1992). Two LMWPs have been isolated from bovine brain and appear to correspond to the first 113 amino acid of PLP plus an unknown N-terminal sequence, and to the last 160 residues with a blocked N-terminus (Lepage et al. 1986 Abbreviations used: DM-20, minor myelin proteolipid protein; ESI, electrospray-ionization; GLC, gas-liquid chromatography; IEC, ionexchange chromatography; LMWPs, low molecular weight (12-18 kDa) proteolipids; MALDI-TOF, matrix-assisted laser desorption ionizationtime of flight; MS, mass spectrometry; m/z, mass to charge ratio; PAGE, polyacrylamide gel electrophoresis; PLP, major myelin proteolipid protein; SDS, sodium dodecyl sulfate; SEC, size-exclusion chromatography.