We have cloned the gene encoding a novel small cytoplasmic RNA from the fission yeast Schizosaccharomyces pombe. Four lines of evidence support the idea that this RNA is a homolog of the 7SL RNA component of mammalian signal recognition particle (SRP), which targets presecretory proteins to the endoplasmic reticulum membrane. First, it shares limited but significant primary sequence homology with previously identified 7SL RNAs and can be folded into a similar secondary structure. Second, it possesses the 5' triphosphate characteristic of unprocessed RNA polymerase III transcripts, and moreover, it is the only fission yeast RNA in this size range with such a terminus. Third, its behavior in cell fractionation experiments suggests that it is part of a small ribonucleoprotein which forms salt-labile contacts with larger structures. Fourth, the particle containing S. pombe 7SL RNA resembles mammalian SRP in both size (llS) and affinity for DEAE-Sepharose. Disruption of the single-copy gene, designated slrl +, reveals that the RNA is indispensable for growth in fission yeast. This result is not surprising, since secretion is an essential cellular process.The signal recognition particle (SRP) is a ribonucleoprotein composed of six polypeptides and one molecule of 7SL RNA (49, 52), which is required for transport of presecretory proteins into microsomal vesicles in vitro (50). Based on experiments using a heterologous system (wheat germ translation components with canine pancreas microsomes and SRP), a model was developed in which SRP is postulated to bind to the signal sequence (50, 56) as it emerges from the ribosome, causing an arrest of translation (51). When the ribosome-nascent chain-SRP complex reaches the endoplasmic reticulum (ER), SRP interacts with an integral membrane protein, known as docking protein (20) or SRP receptor (7), and translation resumes, accompanied by vectorial translocation of the nascent polypeptide.Although the large body of biochemical data which has accumulated concerning the structure and function of SRP for the most part supports this model, some aspects, in particular translation arrest, have recently been questioned (19,29). More directly relevant to the results described in the present paper is the fact that the details of the role played by 7SL RNA in SRP function are as yet almost completely unknown. It has been established that 7SL RNA is essential for reconstitution of a functional canine SRP from its separated components (54). A subparticle derived from reconstitution in the absence of the 9K-14K heterodimer is competent for protein translocation but does not exhibit the arrest of preprolactin synthesis demonstrated for intact SRP (36). The Alu structural domain of 7SL RNA (nucleotides 1 through 100 and 255 through 300) which associates with these proteins is also dispensable for ER targeting (37). Thus, fully half of the RNA can be removed without disrupting the signal recognition and protein translocation activity of SRP, a surprising result, since the entire length of the RN...