“…Thus, RAGE, a pattern recognition receptor [35–37], may recognize negative charge and/or hydrophobicity on its ligands. There are several positively charged patches on the V-domain of RAGE, including Arg-29, Lys-37, Lys-39, Lys-43, Lys-44, Arg-48, Lys-52, Arg-98, Arg-104, Lys-107, Lys-110, Arg-114 and Arg-116 [33,38,39], which may form two main regions [39] that interact with negatively charged regions of RAGE ligands (e.g., Aβ, S100 proteins, age-modified compounds and HMGB1) (Figure 2B). RAGE also has a number of hydrophobic pockets, which include residues Ile-26, Ala-28, Ile-30, Pro-33, Leu-34, Val-35, Leu-36, Trp-61, Val-63, leu-64, Trp-72, Val-75, Val-78, Leu-79, Pro-80, Phe-85, Leu-86, Pro-87, Ala-88, val-89, Ile 91 and Tyr-118 [33,39].…”