Long noncoding RNA myocardial infarction‐associated transcript 2 (lncRNA Mirt2) is a burgeoning lncRNA, its anti‐inflammatory capacity has been testified. Nonetheless, the functions of Mirt2 in immunoglobulin A nephropathy are unexplored. We tried to impart the influences of Mirt2 in lipopolysaccharide (LPS)‐evoked HK‐2 cells damage. HK‐2 cells were manipulated with 10 ng/ml LPS, next cell viability, apoptosis, reactive oxygen species (ROS) generation, pro‐inflammatory factors and Mirt2 expression were evaluated. After pc‐Mirt2 vector transfection, the aforementioned trials were performed. Meanwhile, real‐time quantitative polymerase chain reaction (PCR) experiment was used to detect miR‐126 expression. Subsequently, functions of miR‐126 in LPS‐treated HK‐2 cells were further delved after transfection with miR‐126 mimic. Western blot was used to evaluate NF‐κB pathway. The data showed that LPS invoked HK‐2 cells inflammatory damage via the suppression of cell viability and the acceleration of apoptosis, ROS level, and IL‐1β and IL‐6 secretion. LPS inhibited Mirt2 expression and overexpression of Mirt2 mitigated LPS‐caused inflammatory damage in HK‐2 cells. Additionally, overexpression of Mirt2 repressed miR‐126 expression in LPS‐stimulated cells. Meanwhile the anti‐inflammatory effect of Mirt2 was inverted by upregulating miR‐126 expression. Besides, overexpressed Mirt2 retarded LPS‐activated NF‐κB pathway via repressing miR‐126. The research certified the anti‐inflammatory impacts of Mirt2 on LPS‐impaired HK‐2 cells.