Mysids typically form a large proportion of the hyperbenthic faunal biomass in estuaries and are central to the functioning of estuarine food webs. The population dynamics, annual life histories and reproductive effort of two common temperate estuarine mysids, Tenagomysis chiltoni and T. novae-zealandiae, are described in the intermittently open Kaikorai Lagoon, New Zealand. Mysids were sampled by night, monthly from September 2003 to September 2004. Both species completed their life cycles in the lagoon. There was an apparent spatial separation of breeding populations, with T. chiltoni prevalent in the upper lagoon and T. novae-zealandiae dominating the lower lagoon. Densities were lowest in late winter and peaked in late summer/early autumn for both species. Both species exhibited multivoltine life cycles, with breeding peaks occurring in T. chiltoni. Breeding strategy for both species varied over the year with the adult size, brood size and the reproductive effort of both T. novae-zealandiae and T. chiltoni all being highest in spring. The life histories of both T. novae-zealandiae and T. chiltoni in the Kaikorai Lagoon are comparable to life histories described for other temperate estuarine mysid species in large open estuaries, and were not significantly modified to cope with the unpredictable demands of life in an intermittent estuary.