Microorganisms are among the most important organisms to the ecology of salt marsh estuaries; however, fundamental questions regarding their distribution, environmental controls, and interactions with phytoplankton remain unanswered. We used denaturing gradient gel electrophoresis (DGGE) of bacterial rRNA genes and high performance liquid chromatography (HPLC) of phytoplankton photopigments to characterize planktonic communities from the Ashepoo, Combahee, and Edisto (ACE) Basin and North Inlet (NI) estuaries on the South Carolina coast, USA. Multivariate comparisons of the planktonic community profiles revealed that the 2 estuaries supported distinct bacterial communities. Furthermore, bacterial communities in both systems were partitioned into separate particle-associated (PA) and free-living (FL) components. Differences in bacterial populations were also observed along the salinity gradient within each system. Comparisons of water physicochemistry with bacterial profiles indicated significant correlation of PA bacterial community structures with temperature, salinity, organic carbon, total phosphorus, and ammonium, whereas FL communities were affected by nitrate, ammonium, total phosphorus and orthophosphate. PA bacterioplankton community structures were also associated with diatoms, dinoflagellates, haptophytes and cryptophytes, while FL assemblages corresponded to prasinophytes, chlorophytes, and cyanobacteria. Comparisons between estuaries further demonstrated that ACE Basin communities were mostly associated with the same pigments as PA samples, and that NI assemblages correlated with FLassociated phytoplankton, suggesting different trophodynamics of particles in the 2 systems.KEY WORDS: Bacteria · Phytoplankton · Community structure · HPLC · DGGE · Salt marsh estuary
Resale or republication not permitted without written consent of the publisherAquat Microb Ecol 45: [129][130][131][132][133][134][135][136][137][138][139][140][141][142][143][144][145] 2006 In some aquatic ecosystems abiotic factors such as riverine input, salinity, temperature, or availability of nutrients have been shown to control the composition of the plankton communities present (Lind & Barcena 2003, Smith & Kemp 2003, Kirchman et al. 2004. In estuarine systems in particular, phytoplankton and bacterioplankton productivity and taxonomic composition have been shown to be sensitive to changes in nutrient concentrations (Noble et al. 1997, Seitzinger & Sanders 1999, Kirchman et al. 2004, Lagus et al. 2004). However, other research has demonstrated that the structure of complex, natural communities as well as relatively simple bacterial assemblages may remain unchanged when exposed to significant shifts in nutrient chemistry (Fernandez et al. 1999, Piceno & Lovell 2000, Lovell et al. 2001, LaPara et al. 2002. The importance of such bottom-up controls on community composition is often assumed for ecosystems; however, owing to the inherent complexity of bacterial communities and the practical difficulty of making comparisons of...