The coordination of gestures in consonant clusters differs across languages and hence must be a learned aspect of linguistic knowledge. Precisely pinning down the coordination relation used in a particular language, or for a particular consonant cluster type, has been facilitated by recent research showing that coordination relations structure kinematic variation in unique ways. We apply these methods to a hitherto under-explored topic, the coordination of consonant clusters created via vowel deletion. Our case study involves fricative-fricative and fricative-stop consonant clusters resulting from the variable deletion of devoiced vowels in Tokyo Japanese. Examination of articulatory data obtained by Electromagnetic Articulography (EMA) show that some consonant clusters, i.e., fricative-stop clusters, show gestural reorganization whereas other cluster types, i.e., fricative-fricative sequences, behave as if a vowel remains in place, despite the fact that the tongue dorsum movement for the vowel is absent from the articulatory record. We discuss several theoretical possibilities to account for the differential effects of vowel deletion on gestural re-organization in these environments.