Rural civilization is the soul of rural revitalization strategies. As a booster of rural civilization, the civilized village is an indispensable force to promote the modernization of rural areas, in the meanwhile, the study of its spatial distribution has important theoretical significance and practical value in deepening the theory of rural geography, promoting the development of rural civilization, and helping rural revitalization. Considering civilized villages as the study topic, the spatial and temporal distribution characteristics and geographic context were discussed using spatial analysis methods. The number of civilized villages in the country has shown a clear upward trend since 2005. The spatial distribution pattern of civilized villages in China shows unbalanced patterns with a higher concentration in the east and south. Civilized villages in China present significant patterns of clustering with an increasing degree of spatial clustering, showing a multi-core spatial distribution pattern. Civilized villages in China demonstrate clear spatiotemporal clustering characteristics. A spatiotemporal hot spot cluster formed in the northwestern region from 2005 to 2011, and a spatiotemporal cold spot cluster formed in the southeastern region from 2005 to 2008. The spatial distribution of civilized villages in China has obvious geographical differentiation laws, and factors such as topography, climate, economy, transportation, and policy significantly affect their spatial distribution.