Abstract. Many studies in ecohydrology focusing on hydrologic transport argue that longer residence times across a stream ecosystem should consistently result in higher biological uptake of carbon, nutrients, and oxygen. This consideration does not incorporate the potential for biologically mediated reactions to be limited by stoichiometric imbalances. Based on the relevance and co-dependences between hydrologic exchange, stoichiometry, and biological uptake, and acknowledging the limited amount of field studies available to determine their net effects on the retention and export of resources, we quantified how microbial respiration is controlled by the interactions and supply of essential nutrients needed (C, N, P) in a headwater stream in Colorado, USA. For this, we conducted two rounds of nutrient experiments, each consisting of four sets of continuous injections of Cl- as a conservative tracer, resazurin as a proxy for aerobic respiration, and one of the following nutrient treatments: a) N, b) N+C, c) N+P, and d) C+N+P. Nutrient treatments were considered as known system modifications to alter metabolism, and statistical tests helped identify the relationships between hydrologic transport and respiration metrics. We found that as discharge changed significantly between rounds and across stoichiometric treatments, a) transient storage mainly occurred in side pools along the main channel and was proportional to discharge, and b) microbial respiration remained similar between rounds and across stoichiometric treatments. Together, our results indicate that residence time alone could be a weak predictor of stream respiration due to the relevance of local and dynamic variations in stoichiometric conditions.