This study focuses on the environmental conditions of the Mahanadi Estuary near Paradeep Harbor and the adjacent sea. Data collected from May 2013 to April 2020 from 32 GPS fixed stations was analyzed to assess the water quality in different zones (estuarine, mixed zone, mixed zone south, and mixed zone north) of study area. Parameters such as pH, SST, TSS, nitrite, phosphate, silicate, TOC, chlorophyll, fecal coliform, and heavy metals were used to estimate the Water Quality Index (WQI) for each zone. The study found a deterioration (>30%)in the overall water quality of the Mahanadi Estuary from 2013 to 2020, potentially attributed to river inflows, port activities, and industrial outflows in to the coastal ecosystem. Seasonal variations in temperature, salinity, turbidity, nitrite, nitrate, and ammonia were observed. The water quality showed a deteriorating trend in estuarine, mixed zone, mixed zone south, and mixed zone north. Based on the water quality indices, the ecosystem shows moderate levels of stress. The degraded water quality highlights the need for a targeted mitigation plan to reduce external pressures and enhance the overall ecosystem quality.