The woody plant species composition has been evaluated in three cadastral territories of southwestern Slovakia, together in 77 habitats of non-forest woody vegetation (NFWV). A total of 43 tree species have been identified; 8 of them were alien and 5 species were cultural fruit trees. In total 20 shrub species were identified, out of which 3 were alien. Three woody species are classified as invasive according to the law in Slovakia: Acer negundo L., Ailanthus altissima (Mill.) Swingle, and Lycium barbarum L. They occurred only in 2, maximum in 4 of the evaluated habitats. The most occurring alien tree species Robinia pseudoacacia L. was generally identified in 58 habitats and in 48 habitats, with an incidence over 40% and dominance index of 70.6. The second most occurring alien tree Populus × canadensis had a dominance index of 8.3. The dominant native trees in NFWV were Acer campestre L., Fraxinus excelsior L., Quercus robur L., Salix fragilis L. with the dominance index of 1–5 only.