Loss of 3, 7, or 10 of the amino-terminal 15 residues removed upon autoactivation of the zymogen of the germination protease (GPR), which initiates protein degradation during germination of spores of Bacillus species, did not result in significant changes in (i) the lack of enzymatic activity of the zymogen, (ii) the rate of zymogen autoactivation, or (iii) the unreactivity of the zymogen's single SH group. Removal of 13 aminoterminal residues resulted in a partially active enzyme whose SH group was as reactive as the fully active enzyme. These findings suggest that at least a part of the propeptide blocks access to the enzyme's active site. However, the free propeptide did not inhibit the enzyme.During germination of spores of Bacillus species, 10 to 20% of total spore protein is degraded to amino acids (12, 13). The proteins degraded in this process are a group of small, acidsoluble spore proteins (SASP) which are unique to the spore stage of the life cycle. SASP degradation is initiated by one or two endoproteolytic cleavages catalyzed by a protease termed GPR (for germination protease). GPR is also unique to the dormant and developing spore and is specific for cleavage of SASP. GPR is synthesized during sporulation as a tetrameric zymogen termed P 46 , after the molecular mass (46 kDa) of the B. megaterium protein by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) (6,7,12). The zymogen is converted to the active enzyme (termed P 41 ; also a tetramer) ϳ2 h later in sporulation through removal of 15 (B. megaterium) or 16 (B. subtilis) amino-terminal residues (10, 12). This is an autoprocessing reaction which cleaves GPR at an Asp-Leu bond in a region with some sequence similarity to the highly conserved sequence recognized and cleaved in GPR's SASP substrates. Autoprocessing of P 46 3P 41 is stimulated both in vitro and in vivo by desiccation, a decrease in pH, and accumulation of dipicolinic acid (DPA), an abundant small molecule in dormant spores (3-5). The conversion of P 46 to P 41 also appears to be associated with at least some structural change in the protein, as the enzyme's single sulfhydryl group is reactive in P 41 but not in P 46 (4). In addition to autoprocessing of P 46 3P 41 , P 41 slowly undergoes autoprocessing to a slightly smaller form termed P 39 , which has a catalytic activity indistinguishable from that of P 41 (3, 5). The sequence cleaved in the P 41 3P 39 conversion also resembles that cleaved in SASP by GPR.Synthesis of GPR as an inactive zymogen is essential for formation of spores exhibiting their full resistance to several treatments (3). Consequently, we are most interested in the reason(s) for the inactivity of P 46 . Unfortunately, GPR exhibits no obvious mechanistic or amino acid sequence similarity to any of the known classes of proteases. However, changes in the amino acids around the site cleaved in the P 46 3P 41 conversion such that this sequence is even more like the SASP sequence cleaved by GPR result in a zymogen that more readily processes to P 4...